Index

B

back_transcribe() (in module bioseqkit.transform) base_composition() (in module bioseqkit.stats) bioseqkit.index module bioseqkit.io module

bioseqkit.kmer module bioseqkit.stats module bioseqkit.transform module build_faidx() (in module bioseqkit.index)

C

canonical_kmer() (in module bioseqkit.kmer) complement() (in module bioseqkit.transform)

count_kmers() (in module bioseqkit.kmer) count_kmers_parallel() (in module bioseqkit.kmer)

F

FaidxIndex (class in bioseqkit.index) FaidxRecord (class in bioseqkit.index) FastaRecord (class in bioseqkit.io)

FastqRecord (class in bioseqkit.io) fetch() (bioseqkit.index.FaidxIndex method) (in module bioseqkit.index) Frame (class in bioseqkit.transform)

G

gc_content() (in module bioseqkit.stats)

I

iter_kmers() (in module bioseqkit.kmer)

M

minimizers() (in module bioseqkit.kmer) module bioseqkit.index bioseqkit.io bioseqkit.kmer bioseqkit.stats bioseqkit.transform

N

n50() (bioseqkit.stats.SeqStats method)

n_ratio() (in module bioseqkit.stats)

O

open_text() (in module bioseqkit.io)

P

parse_fasta() (in module bioseqkit.io) parse_fastq() (in module bioseqkit.io)

parse_region() (in module bioseqkit.index) phred_scores() (bioseqkit.io.FastqRecord method)

R

reverse_complement() (in module bioseqkit.transform)

S

SeqStats (class in bioseqkit.stats)

sequence_stats() (in module bioseqkit.stats) six_frame_translation() (in module bioseqkit.transform)

T

top_kmers() (in module bioseqkit.kmer)

transcribe() (in module bioseqkit.transform) translate() (in module bioseqkit.transform)

W

write_fasta() (in module bioseqkit.io)